Pre-requisites, installation, and execution of DepRanker:
Pre-requisites:
1.Linux/Unix based Operating System (Ubuntu, Fedora, Red Hat, Novell Suse)
2.RAM: 8GB or more.
3.R/BioC requirements: edgeR and limma packages
4.Python requirements: numpy, sciPy and
Tkinker for GUI
Users need to install the dependencies listed above for command line version and
graphical version. Once the dependencies have been resolved the user can use the
following four steps to run the DepRanker:
1.Download either the deprankergui-git zip file from the link provided
here.
2.Unzip the file.
3.On the terminal go inside the depranker source folder (for example, to use the
command line version type the following on the terminal)
cd depranker-git/depranker
4.User can thus run the DepRanker directly using the command given below for
the specific version (CMD or GUI)