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Oral cancer is the sixth common malignancy and a
major cause of cancer morbidity and mortality
worldwide and buccal mucosa is one most commonly
affected sites. Worldwide over 350,000 to 400,000
new cases of cancer found each year.
Cancers of Head and Neck comprises ~27 % of total cancers
seen in males at Tata Memorial Centre. Of these
~12 % are from the Oral cavity. In the post
genomic era, efforts to understand oral cancer are
aimed at obtaining genomic and proteomic profiles
which generate enormous data. Thus the challenge
is to analyze the data effectively and utilize the
information for diagnosis, prognosis and
treatment.
The existing database on oral cancer genes OrCGDB
(http://www.tumor-gene.org/Oral/oral.html)
has information only about 15 genes without a search engine and
Interactome map. We are developing a more user
friendly database that would provide the
scientist, information and external links from one
place. At present the data base contains 242 genes
mined from PubMed database (34 genes), Shillitoe (http://www.upstate.edu/microb/shillite/Published_Oral_Cancer Genes.htm) medline
search (90 genes) and the gene list reported in
full text articles from microarray and proteomics
studies (118 genes). |
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Click here to get list of all 242 genes in the
database. For each gene description and hyperlink to
its PubMed reference. Clicking on gene name gives detailed
information on aliases, function, chromosomal
location, mutations and SNPs, mRNA expression,
Protein information, pathways involved and
interacting proteins, expression of genes in
different tissues, and clinical correlates. |
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Keyword search using Gene name or gene symbol,
Chromosomal location, C.G.H (in %), and Molecular weight.
Advanced search option for multiple searches from
the above
parameters is also available. |
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Interactome Map shows the interaction between
genes for a particular biological process and
molecular functions. The connecting line between the two genes
gives the PubMed reference for their interactions.
Clicking on the gene name gives detailed
information. |
For
suggestion and comments: Curator:
Mr. Nikhil S. Gadewal
(ngadewal@actrec.gov.in)
Science Editor: Dr. Surekha M. Zingde (szingde@actrec.gov.in) |