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Oral cancer is the
sixth common malignancy and a major cause of
cancer morbidity and mortality worldwide and
buccal mucosa is one most commonly affected sites.
Worldwide over 350,000 to 400,000 new cases of
cancer found each year. Cancers
of Head and Neck comprises ~27 % of total cancers
seen in males at Tata Memorial Centre. Of these
~12 % are from the Oral cavity. In the post
genomic era, efforts to understand oral cancer are
aimed at obtaining genomic and proteomic profiles
which generate enormous data. Thus the challenge
is to analyze the data effectively and utilize the
information for diagnosis, prognosis and
treatment.
The
existing database on oral cancer genes OrCGDB (http://www.tumor-gene.org/Oral/oral.html) has
information only about 15 genes without a search
engine and Interactome map. We are developing a
more user friendly database that would provide the
scientist, information and external links from one
place. At present the data base contains 242 genes
mined from PubMed database (34 genes), Shillitoe
(http://www.upstate.edu/microb/shillite/Published_Oral_Cancer_Genes.htm)
medline search (90 genes) and the gene list
reported in full text articles from microarray and
proteomics studies (118 genes).
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Click
here to get list of all 242 genes in the
database. For each gene description and hyperlink
to its PubMed reference. Clicking on gene name
gives detailed information on aliases, function,
chromosomal location, mutations and SNPs,
mRNA expression, Protein information, pathways
involved and interacting proteins, expression of
genes in different tissues, and clinical
correlates. |
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Keyword
search using Gene name or gene symbol,
Chromosomal location, C.G.H (in %), and Molecular
weight. Advanced search option for multiple
searches from the above parameters is also
available. |
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Interactome
Map shows the interaction between genes for a
particular biological process and molecular
functions. The connecting line between the two
genes gives the PubMed reference for their
interactions. Clicking on the gene name gives
detailed information.
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Oral Cancer Gene Database (Version
I) consists of 242 genes which has been published in :
Gadewal
NS,
Zingde SM., Database and
interactome map of genes
involved in oral cancer,
Online
J Bioinformatics, 8 (1) 41-44,
2007.
For
suggestion and comments: Curator: Mr.
Nikhil S. Gadewal mailto:ngadewal@actrec.gov.in)
Science
Editor: Dr. Surekha M. Zingde (szingde@actrec.gov.in) |